COBREXA.jl

COBREXA.jl is an HPC-capable metabolic modeling toolbox, with advanced functionality for simulating microbiomes and bacterial communities.

Compresso

Compresso is an open-source PyTorch framework for sparse representation learning. It provides reusable building blocks for learning sparse neural representations, dynamic sparsification, sparse inference, and semantic analysis, enabling researchers to rapidly prototype sparse neural architectures while focusing on models rather than infrastructure.

Dataspecer

Dataspecer is a tool for the management and modeling of data structures. The structures may be mapped to user-provided ontologies and exported into various formats.

DortDB

A modular multi-language in-memory query engine. Queries the arrays, DOM trees, and graphs already in your app's memory, in place and across languages, with no database process and no import step.

EasyStudy

EasyStudy is an open-source framework for interactive user studies, including recommender systems, HCI, and generally any item-based experiments. The software includes many interesting algorithms and testing datasets.

FDepHunter

FDepHunter is a novel and interactive method for dependency discovery that augments an Armstrong relation with additional tuples. It relies on artificially generated negative examples that emulate real-world tuples to help expose fake FDs, together with domain experts to confirm that positive examples indeed reflect the characteristics of the original dataset.

GroupRec

GroupRec is a unified toolkit for reproducible and inspectable group recommendation research.

Knowledge Graph Browser

A tool for visual exploration of knowledge graphs through different views defined by various browsing configurations.

LinkedPipes ETL

LinkedPipes ETL is an open-source extract-transform-load tool focused on publication and consumption of data on the Web, including linked data. It is already deployed in multiple organizations world-wide and we have plenty of ideas of how to improve it further.

MM-cat

A modular and extensible framework that enables to design a multi-model schema. An initial ER schema is transformed to a unified categorical representation which can then be easily mapped to any combination of models in a particular DBMS, or their set.

MolArt

MolArt is a responsive, easy-to-use JavaScript plugin which enables users to view annotated protein sequence and overlay the annotations over a corresponding experimental or predicted protein structure.

P2Rank

P2Rank is a state-of-the-art machine learning-based method for ligand binding sites prediction based on protein structure.

PraK

PraK V4 is an interactive video search system built for retrieval competitions.

STIRdata

STIRdata is an EU project focused on improving interoperability of data about companies and organizations coming from business registries in individual european countries. In the project we apply our know-how in data modeling and data standardization.

Traveler

Traveler is an RNA sescondary structure visualization tool implementing a template-based approach enabling to lay out even the largest RNA structures in the standard orientation.