Petr Škoda, M.Sc.

Ph.D. student, supervisor David Hoksza, Ph.D.

Research groups



NDBI007Data Organisation and Processing I
NPRG045Individual Software Project
NSWI122Dissertation Thesis Preparation

Supervised thesestop

Platform for benchmarking efficiency of molecular similaritiesVladimír PatíkBS20162017

Research grantstop

  • Efficient Exploration of Linked Data Cloud (GACR 16-09713) 2016-2018 cooperant
  • Efficient Molecular Representation (GAUK 154613) 2013-2014 head investigator



Refereed (journals/proceedings) (4)

  • Klímek J., Škoda P.: LinkedPipes ETL in Use: Practical Publication and Consumption of Linked Data, accepted for publication in The 19th International Conference on Information Integration and Web-based Applications & Services Proceedings, Salzburg, Austria, Association for Computing Machinery, ISBN: 978-1-4503-5299-4, pp. 1-5, 2017 - text
  • Klímek J., Škoda P.: Speeding up publication of Linked Data using data chunking in LinkedPipes ETL, accepted for publication in Confederated International Conferences: CoopIS, C&TC, and ODBASE 2017, Rhodes, Greece, October 23-27, 2017, Proceedings, Part II, Rhodes, Greece, Springer, ISBN: 978-3-319-69458-0, ISSN: 0302-9743, pp. 1-17, 2017
  • [Journal (without IF)]Knap T., Hanečák P., Klímek J., Mader C., Nečaský M., Van Nuffelen B., Škoda P.: UnifiedViews: An ETL Tool for RDF Data Management, in Semantic Web, ISSN: 1570-0844, pp. 1-15, 2017 - text
  • Nečaský M., Klímek J., Škoda P.: Practical use cases for Linked Open Data in eGovernment demonstrated on the Czech Republic, in Electronic Government and the Information Systems Perspective: 6th International Conference, EGOVIS 2017, Lyon, France, August 28-31, 2017, Proceedings, Lyon, France, Springer International Publishing, ISBN: 978-3-319-64248-2, pp. 80-96, 2017 - text


Refereed (journals/proceedings) (6)

  • Hoksza D., Škoda P.: Using Bayesian Modeling on Molecular Fragments Features for Virtual Screening, in 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), Chiang Mai, Thailand, IEEE, ISBN: 978-1-4673-9472-7, pp. nestránkováno, 2016
  • Jelínek J., Hoksza D., Škoda P.: Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites, in 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), Atlanta, GA, USA, IEEE, ISBN: 978-1-5090-4199-2, pp. nestránkováno, 2016
  • Klímek J., Škoda P., Nečaský M.: LinkedPipes ETL: Evolved Linked Data Preparation, in Lecture Notes in Computer Science, Heraklion, Greece, Springer International Publishing AG, ISBN: 978-3-319-47601-8, ISSN: 0302-9743, pp. 95-100, 2016 - text
  • Klímek J., Škoda P., Nečaský M.: Requirements on Linked Data Consumption Platform, in Proceedings of the Workshop on Linked Data on the Web co-located with 25th International World Wide Web Conference (WWW 2016), Montreal, Canada, CEUR Workshop Proceedings, ISSN: 1613-0073, pp. nestránkováno, 2016 - text
  • Mynarz J., Klímek J., Dudáš M., Škoda P., Engels C., Musyaffa F. A., Svátek V.: Reusable transformations of Data Cube Vocabulary datasets from the fiscal domain, in Proceedings of the 4th International Workshop on Semantic Statistics co-located with 15th International Semantic Web Conference (ISWC 2016), Kobe, Japan, CEUR Workshop Proceedings, ISSN: 1613-0073, pp. nestránkováno, 2016 - text
  • Škoda P., Hoksza D.: Benchmarking Platform for Ligand-Based Virtual Screening, in 2016 IEEE International Conference on Bioinformatics and Biomedicine, Shenzhen, IEEE (The Institute of Electrical and Electronics Engineers), ISBN: 978-1-5090-1611-2, pp. 1225-1232, 2016 - text


Refereed (journals/proceedings) (2)

  • Knap T., Škoda P., Klímek J., Nečaský M.: UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management, in Proceedings of the Dateso 2015 Annual International Workshop on DAtabases, TExts, Specifications and Objects, Nepřívěc u Sobotky, Jičín, Czech Republic, Matfyzpress, ISBN: 978-80-7378-285-6, ISSN: 1613-0073, pp. 111-120, 2015 - text
  • Škoda P., Hoksza D.: Exploration of topological torsion fingerprints, in 2015 IEEE International Conference on Bioinformatics and Biomedicine, Washington DC, IEEE (The Institute of Electrical and Electronics Engineers), ISBN: 978-1-4673-6799-8, pp. 822-828, 2015 - text


Refereed (journals/proceedings) (4)

  • Hoksza D., Škoda P.: 2D Pharmacophore Query Generation, in Lecture Notes in Computer Science, Zhangjiajie, China, Springer International Publishing, ISBN: 978-3-319-08170-0, ISSN: 0302-9743, pp. 289-300, 2014
  • Hoksza D., Škoda P.: Scaffold-based chemical space exploration, in Bioinformatics and Biomedicine (BIBM), 2014 IEEE International Conference on, Belfast, UK, IEEE, ISBN: 978-1-4799-5669-2, pp. 1-3, 2014
  • Knap T., Kukhar M., Macháč B., Škoda P., Tomeš J., Vojt J.: UnifiedViews: An ETL Framework for Sustainable RDF Data Processing, in The Semantic Web: ESWC 2014 Satellite Events, Heraklion, Greece, Springer International Publishing, ISBN: 978-3-319-11955-7, ISSN: 0302-9743, pp. 379-383, 2014
  • Škoda P., Hoksza D.: Target-Oriented Generic Fingerprint-Based Molecular Representation, in Computer Science & Information Technology, Sydney, Australia, AIRCC Publishing, ISBN: 978-1-921987-18-2, pp. 231-244, 2014


Refereed (journals/proceedings) (2)

  • Hoksza D., Škoda P., Vorsilak M., Svozil D.: Molpher: a software framework for systematic chemical space exploration, in Journal of Cheminformatics, Vol. 6, Num. 1, ISSN: 1758-2946, pp. nestránkováno, 2013
  • Škoda P., Hoksza D.: Chemical Space Visualization Using ViFrame, in 2013 IEEE/ACIS 12th International Conference on Computer and Information Science (ICIS), Niigata, Japan, IEEE, ISBN: 978-1-4799-0174-6, pp. 541-546, 2013


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