David Hoksza, Ph.D.

Research groups

Siret

Research topics

• bioinformatics
• structural bioinformatics
• cheminformatics
• protein and RNA databases

Teachingtop

Supervised thesestop

Research grantstop

• Similarity Search in Biological Databases (GAUK 57907) 2007-2008 head investigator
• Similarity Searching in Very Large Multimedia Databases (GACR 201/09/0683) 2009-2011 cooperant
• Modern methods and applications of software engineering (GAUK SVV-2010-261312) 2010-2010 cooperant

Selected publications (complete list)top

• Galgonek J., Hoksza D.: SProt - From Local to Global Protein Structure Similarity, in 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshop, Hong Kong, China, IEEE, ISBN: 978-1-4244-8302-0, pp. 124-129, 2010 - článek v PDF
• Hoksza D., Galgonek J.: Alignment-Based Extension to DDPIn Feature Extraction, in International Journal of Computational Bioscience, Vol. 1, Num. 1, ISSN: 1918-3909, pp. 79-87, 2010 - článek v PDF
• Hoksza D.: DDPIn - Distance and Density Based Protein Indexing, in 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, Nashville, Tennessee, USA, IEEE, ISBN: 978-1-4244-2756-7 , pp. 1-8, March 2009
• Hoksza D., Galgonek J.: Density-Based Classification of Protein Structures Using Iterative TM-score, in 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, Wahsington, D.C., USA, IEEE, ISBN: 978-1-4244-5121-0, pp. 87-93, 2009
• Hoksza D.: Improved Alignment of Protein Sequences Based on Common Parts, in ISBRA 2008: Bioinformatics Research and Applications, Atlanta, GA, USA, Springer, ISBN: 978-3-540-79449-3, pp. 87-99, May 2008

Software

PGRTree

Contactstop

• hoksza<at>ksi.mff.cuni.cz
• http://siret.ms.mff.cuni.cz/hoksza/
• room 209, 2nd floor
• +420 221 914 122